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Protein structure prediction [electronic resource] : methods and protocols /

Additional authors: Webster, David M
Series: Methods in molecular biology ; Published by : Humana Press, (Totowa, New Jersey:) Physical details: 1 online resource, x, 422 pages: illustration ; ISBN: 0896036375 . Year: 2000
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Includes bibliographical references and index

Multiple sequence alignment -- Protein structure comparison using SAP -- Discovering patterns conserved in sets of unaligned protein sequences -- Identification of domains from protein sequences -- Third generation prediction of secondary structures -- Comparative protein structure modeling: introduction and practical examples with modeller -- A practical guide to protein structure prediction -- Derivation and testing residue-residue mean-force potentials for use in protein structure recognition -- Genetic algorithms and protein folding -- Scoring functions for ab initio protein structure prediction -- Ab initio loop modeling and its application to omology modeling -- The dead-end elimination theorem: mathematical aspects, implementation, optimizations, evaluation, and performance -- Classification of prtein folds -- Modeling transmembrane helix bundles by restrained MD simulations -- Predictive models of protein-active sites -- Flexible docking of peptide ligands to proteins -- Geometrical docking algorithms: a practical approach -- Protein-protein docking: generation and filtering of complexes

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